What we do

Clinic Reimbursement & Oversight


Federally qualified health centers (FQHCs), rural health clinics (RHCs), and community mental health centers (CMHCs) play a vital role in expanding access to primary care and behavioral health services for Medicaid beneficiaries. Myers & Stauffer helps state Medicaid agencies develop and oversee reimbursement methodologies, financial oversight activities, compliance initiatives, and provider payment programs, including specialized support for FQHC and RHC prospective payment systems (PPS) and managed care wrap payments. Our independent, government-focused expertise helps agencies strengthen reimbursement accuracy, regulatory compliance, and long-term program sustainability.

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Supporting FQHC & RHC Reimbursement & Oversight

Federally qualified health centers (FQHCs), rural health clinics (RHCs), and community mental health centers (CMHCs) play important roles in Medicaid programs by expanding access to primary care, preventive services, and behavioral health care, particularly in underserved and rural communities.

While FQHCs, RHCs, and CMHCs operate under different reimbursement and regulatory frameworks, each requires specialized oversight, reimbursement expertise, and a thorough understanding of provider operations.

Myers & Stauffer supports government agencies in designing, implementing, and overseeing reimbursement, compliance, and financial oversight programs for clinic-based providers across Medicaid.

How We Support Clinics

While much of our work focuses on FQHC and RHC prospective payment systems, we also support Medicaid agencies with reimbursement analysis, financial oversight, and policy initiatives affecting other clinic-based providers, including CMHCs.

We assist Medicaid agencies in developing and maintaining PPS rates for FQHCs and RHCs in accordance with federal requirements. 

Our services include: 

  • PPS rate development and recalculation. 
  • Evaluation of encounter rate methodologies. 
  • Review of change-in-scope adjustments. 
  • Ongoing rate maintenance and updates. 
  • Analysis to support state plan requirements. 

Our experience helps ensure that PPS rates are developed consistently and supported by appropriate documentation. 

Auditing provider cost reports and financial data is a key component of reimbursement oversight for clinic-based providers, including FQHCs, RHCs, and other provider types as applicable.

We support agencies through: 

  • Review and validation of provider cost reports. 
  • Reconciliation processes tied to PPS or alternative payment methodologies. 
  • Identification of reporting inconsistencies or compliance issues. 
  • Development of standardized review procedures. 

This work helps agencies maintain 
accurate and defensible reimbursement processes. 

As states expand managed care, ensuring accurate and timely wrap payments to FQHCs and RHCs is critical. 

Our services include: 

  • Development and evaluation of wrap payment methodologies. 
  • Analysis of managed care encounter data. 
  • Reconciliation of wrap payments to PPS requirements. 
  • Identification of data gaps and process improvements. 

We help agencies align managed care payment structures with federal requirements for FQHC and RHC reimbursement. 

We assist agencies in maintaining compliance with federal and state requirements related to clinic reimbursement and provider compliance.

Our work includes: 

  • Documentation and compliance reviews. 
  • Evaluation of billing and encounter practices. 
  • Audit support and program integrity activities. 
  • Development of audit protocols and guidance. 

We provide data-driven insight to support policy decisions affecting clinic-based providers across Medicaid programs. 

Our services include: 

  • Utilization and financial trend analysis. 
  • Modeling of reimbursement changes. 
  • Support for state plan amendments and program updates. 
  • Analysis of access and service delivery impacts. 

Informed by Provider Experience

Our work with FQHCs and RHCs is informed by a broader understanding of provider operations and reimbursement across care settings. 

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